3D structure

PDB id
8T3E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UGAAU*AGGAA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T3E_065 not in the Motif Atlas
Homologous match to IL_8C3A_073
Geometric discrepancy: 0.1081
The information below is about IL_8C3A_073
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_95716.2
Basepair signature
cWW-cWW-tHS-tHS-tSH-cWW
Number of instances in this motif group
18

Unit IDs

8T3E|1|A1|U|1645
8T3E|1|A1|G|1646
8T3E|1|A1|A|1647
8T3E|1|A1|A|1648
8T3E|1|A1|U|1649
*
8T3E|1|A1|A|1806
8T3E|1|A1|G|1807
8T3E|1|A1|G|1808
8T3E|1|A1|A|1809
8T3E|1|A1|A|1810

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AA
60S ribosomal protein L2-A
Chain AZ
60S ribosomal protein L27-A
Chain Ag
60S ribosomal protein L34-A

Coloring options:


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