IL_8T3E_132

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

8T3E|1|A1|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_132 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1012

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8T3E|1|A1|G|3328
8T3E|1|A1|U|3329
8T3E|1|A1|A|3330
*
8T3E|1|A1|U|3373
8T3E|1|A1|U|3374
8T3E|1|A1|A|3375
8T3E|1|A1|A|3376
8T3E|1|A1|G|3377
8T3E|1|A1|C|3378

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AW

RPL24A isoform 1

Chain Ad

60S ribosomal protein L31-A