IL_8T3F_118
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3F_118 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.1361
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8T3F|1|A1|C|3018
8T3F|1|A1|U|3019
8T3F|1|A1|U|3020
8T3F|1|A1|A|3021
8T3F|1|A1|G|3022
8T3F|1|A1|U|3023
8T3F|1|A1|A|3024
8T3F|1|A1|C|3025
*
8T3F|1|A1|G|3030
8T3F|1|A1|G|3031
8T3F|1|A1|A|3032
8T3F|1|A1|A|3033
8T3F|1|A1|C|3034
8T3F|1|A1|A|3035
8T3F|1|A1|G|3036
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AH
- 60S ribosomal protein L9-A
- Chain AV
- 60S ribosomal protein L23-A
- Chain Am
- Ubiquitin-60S ribosomal protein L40
- Chain DC
- Elongation factor 2
Coloring options: