IL_8T3F_164

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8T3F|1|B5|U|313, 8T3F|1|B5|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3F_164 not in the Motif Atlas

Homologous match to IL_8P9A_391

Geometric discrepancy: 0.1254

The information below is about IL_8P9A_391

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8T3F|1|B5|U|311
8T3F|1|B5|A|312
8T3F|1|B5|U|313
8T3F|1|B5|C|314
8T3F|1|B5|A|315
8T3F|1|B5|A|316
*
8T3F|1|B5|U|348
8T3F|1|B5|U|349
8T3F|1|B5|U|350
8T3F|1|B5|C|351
8T3F|1|B5|A|352
8T3F|1|B5|A|353
8T3F|1|B5|C|354
8T3F|1|B5|G|355

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A

Chain BL

40S ribosomal protein S11-A

Chain BX

40S ribosomal protein S23-A