IL_8T4S_016

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

8T4S|1|2|U|305, 8T4S|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_016 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3949

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

8T4S|1|2|C|216
8T4S|1|2|A|217
8T4S|1|2|U|218
8T4S|1|2|U|219
*
8T4S|1|2|A|302
8T4S|1|2|C|303
8T4S|1|2|C|304
8T4S|1|2|U|305
8T4S|1|2|C|306
8T4S|1|2|G|307
8T4S|1|2|G|308
8T4S|1|2|G|309

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8