IL_8T4S_061

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8T4S|1|2|C|1215, 8T4S|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_061 not in the Motif Atlas

Homologous match to IL_8C3A_449

Geometric discrepancy: 0.0969

The information below is about IL_8C3A_449

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.10

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

16

Unit IDs

8T4S|1|2|A|1214
8T4S|1|2|C|1215
8T4S|1|2|C|1216
8T4S|1|2|A|1217
*
8T4S|1|2|U|1681
8T4S|1|2|C|1682
8T4S|1|2|C|1683
8T4S|1|2|C|1684
8T4S|1|2|U|1685

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16

Chain a

40S ribosomal protein S26

Chain c

40S ribosomal protein S28