IL_8T4S_064
3D structure
- PDB id
- 8T4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CCGG*CCGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: CCGG,CCGG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T4S_064 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.1806
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8T4S|1|2|C|1267
8T4S|1|2|C|1268
8T4S|1|2|G|1269
8T4S|1|2|G|1270
*
8T4S|1|2|C|1512
8T4S|1|2|C|1513
8T4S|1|2|G|1514
8T4S|1|2|G|1515
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain K
- 40S ribosomal protein S10
- Chain P
- 40S ribosomal protein S15
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
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