IL_8T4S_074

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUU,AAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_074 not in the Motif Atlas

Geometric match to IL_4WZM_001

Geometric discrepancy: 0.1607

The information below is about IL_4WZM_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8T4S|1|2|G|1406
8T4S|1|2|U|1407
8T4S|1|2|U|1408
*
8T4S|1|2|A|1438
8T4S|1|2|A|1439
8T4S|1|2|C|1440

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain U

40S ribosomal protein S20