IL_8T4S_078
3D structure
- PDB id
- 8T4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 8T4S|1|2|A|1580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T4S_078 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.2102
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8T4S|1|2|G|1550
8T4S|1|2|U|1551
8T4S|1|2|G|1552
8T4S|1|2|C|1553
8T4S|1|2|C|1554
8T4S|1|2|U|1555
8T4S|1|2|A|1556
8T4S|1|2|C|1557
8T4S|1|2|C|1558
*
8T4S|1|2|G|1577
8T4S|1|2|U|1578
8T4S|1|2|A|1579
8T4S|1|2|A|1580
8T4S|1|2|C|1581
8T4S|1|2|C|1582
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain K
- 40S ribosomal protein S10
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
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