3D structure

PDB id
8T5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
8T5D|1|v|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T5D_146 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0956
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

8T5D|1|v|U|605
8T5D|1|v|G|606
8T5D|1|v|A|607
8T5D|1|v|A|608
8T5D|1|v|A|609
8T5D|1|v|U|610
8T5D|1|v|C|611
8T5D|1|v|C|612
*
8T5D|1|v|G|628
8T5D|1|v|A|629
8T5D|1|v|A|630
8T5D|1|v|C|631
8T5D|1|v|U|632
8T5D|1|v|G|633

Current chains

Chain v
16s RNA

Nearby chains

Chain c
30S ribosomal protein S4
Chain g
30S ribosomal protein S8
Chain o
30S ribosomal protein S16
Chain p
30S ribosomal protein S17

Coloring options:


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