IL_8T5H_006

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_006 not in the Motif Atlas

Homologous match to IL_4WF9_001

Geometric discrepancy: 0.0989

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8T5H|1|B|G|24
8T5H|1|B|U|25
8T5H|1|B|G|26
8T5H|1|B|G|27
8T5H|1|B|A|28
8T5H|1|B|U|29
8T5H|1|B|G|30
*
8T5H|1|B|C|510
8T5H|1|B|U|511
8T5H|1|B|G|512
8T5H|1|B|A|513
8T5H|1|B|A|514
8T5H|1|B|A|515
8T5H|1|B|C|516

Current chains

Chain B

23S

Nearby chains

Chain 0

50S ribosomal protein L32

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22