3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
8T5H|1|B|G|801, 8T5H|1|B|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T5H_022 not in the Motif Atlas
Homologous match to IL_5J7L_260
Geometric discrepancy: 0.0739
The information below is about IL_5J7L_260
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

8T5H|1|B|G|674
8T5H|1|B|A|675
8T5H|1|B|A|676
8T5H|1|B|A|677
8T5H|1|B|C|678
*
8T5H|1|B|G|799
8T5H|1|B|A|800
8T5H|1|B|G|801
8T5H|1|B|A|802
8T5H|1|B|U|803
8T5H|1|B|A|804
8T5H|1|B|G|805
8T5H|1|B|C|806

Current chains

Chain B
23S

Nearby chains

Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15

Coloring options:


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