IL_8T5H_025

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_025 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.1019

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

8T5H|1|B|U|703
8T5H|1|B|G|704
8T5H|1|B|A|705
8T5H|1|B|A|706
8T5H|1|B|G|707
*
8T5H|1|B|U|724
8T5H|1|B|G|725
8T5H|1|B|G|726
8T5H|1|B|A|727
8T5H|1|B|G|728

Current chains

Chain B

23S

Nearby chains

Chain C

50S ribosomal protein L2