IL_8T5H_027
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8T5H|1|B|A|788, 8T5H|1|B|A|789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T5H_027 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.0839
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8T5H|1|B|G|775
8T5H|1|B|G|776
8T5H|1|B|G|777
*
8T5H|1|B|C|787
8T5H|1|B|A|788
8T5H|1|B|A|789
8T5H|1|B|U|790
8T5H|1|B|C|791
Current chains
- Chain B
- 23S
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
- Chain E
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L22
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