IL_8T5H_033

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_033 not in the Motif Atlas

Homologous match to IL_5J7L_272

Geometric discrepancy: 0.1038

The information below is about IL_5J7L_272

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8T5H|1|B|G|864
8T5H|1|B|C|865
8T5H|1|B|A|866
8T5H|1|B|C|867
8T5H|1|B|U|868
*
8T5H|1|B|A|909
8T5H|1|B|A|910
8T5H|1|B|A|911
8T5H|1|B|C|912

Current chains

Chain B

23S

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16