IL_8T5H_041

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8T5H|1|B|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_041 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1255

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8T5H|1|B|U|1018
8T5H|1|B|U|1019
8T5H|1|B|A|1020
8T5H|1|B|A|1021
8T5H|1|B|G|1022
8T5H|1|B|U|1023
8T5H|1|B|G|1024
*
8T5H|1|B|C|1140
8T5H|1|B|U|1141
8T5H|1|B|A|1142
8T5H|1|B|A|1143
8T5H|1|B|A|1144

Current chains

Chain B

23S

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13