3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUGCGAAG*UGGAG
Length
13 nucleotides
Bulged bases
8T5H|1|B|C|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T5H_050 not in the Motif Atlas
Homologous match to IL_5J7L_288
Geometric discrepancy: 0.1187
The information below is about IL_5J7L_288
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

8T5H|1|B|C|1208
8T5H|1|B|U|1209
8T5H|1|B|G|1210
8T5H|1|B|C|1211
8T5H|1|B|G|1212
8T5H|1|B|A|1213
8T5H|1|B|A|1214
8T5H|1|B|G|1215
*
8T5H|1|B|U|1234
8T5H|1|B|G|1235
8T5H|1|B|G|1236
8T5H|1|B|A|1237
8T5H|1|B|G|1238

Current chains

Chain B
23S

Nearby chains

Chain Q
50S ribosomal protein L20
Chain S
50S ribosomal protein L22

Coloring options:


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