IL_8T5H_079
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GC*GCAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T5H_079 not in the Motif Atlas
- Geometric match to IL_5J7L_318
- Geometric discrepancy: 0.1065
- The information below is about IL_5J7L_318
- Detailed Annotation
- Bulged stacked bases
- Broad Annotation
- Bulged stacked bases
- Motif group
- IL_22551.4
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 9
Unit IDs
8T5H|1|B|G|1933
8T5H|1|B|C|1934
*
8T5H|1|B|G|1964
8T5H|1|B|C|1965
8T5H|1|B|A|1966
8T5H|1|B|C|1967
Current chains
- Chain B
- 23S
Nearby chains
- Chain 5
- Transfer RNA; tRNA
Coloring options: