3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GC*GCAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T5H_079 not in the Motif Atlas
Geometric match to IL_5J7L_318
Geometric discrepancy: 0.1065
The information below is about IL_5J7L_318
Detailed Annotation
Bulged stacked bases
Broad Annotation
Bulged stacked bases
Motif group
IL_22551.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
9

Unit IDs

8T5H|1|B|G|1933
8T5H|1|B|C|1934
*
8T5H|1|B|G|1964
8T5H|1|B|C|1965
8T5H|1|B|A|1966
8T5H|1|B|C|1967

Current chains

Chain B
23S

Nearby chains

Chain 5
Transfer RNA; tRNA

Coloring options:


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