IL_8T5H_082

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

8T5H|1|B|C|2055, 8T5H|1|B|U|2613, 8T5H|1|B|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_082 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.1237

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

8T5H|1|B|A|2054
8T5H|1|B|C|2055
8T5H|1|B|G|2056
*
8T5H|1|B|C|2612
8T5H|1|B|U|2613
8T5H|1|B|A|2614
8T5H|1|B|U|2615

Current chains

Chain B

23S

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L22