IL_8T5H_104

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_104 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1047

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8T5H|1|B|C|2652
8T5H|1|B|U|2653
8T5H|1|B|A|2654
8T5H|1|B|G|2655
8T5H|1|B|U|2656
8T5H|1|B|A|2657
8T5H|1|B|C|2658
*
8T5H|1|B|G|2663
8T5H|1|B|G|2664
8T5H|1|B|A|2665
8T5H|1|B|C|2666
8T5H|1|B|C|2667
8T5H|1|B|G|2668

Current chains

Chain B

23S

Nearby chains

Chain G

50S ribosomal protein L6