IL_8T5H_129
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 8T5H|1|v|U|244, 8T5H|1|v|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T5H_129 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.1249
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8T5H|1|v|G|242
8T5H|1|v|A|243
8T5H|1|v|U|244
8T5H|1|v|U|245
8T5H|1|v|A|246
8T5H|1|v|G|247
*
8T5H|1|v|C|277
8T5H|1|v|G|278
8T5H|1|v|A|279
8T5H|1|v|C|280
8T5H|1|v|G|281
8T5H|1|v|A|282
8T5H|1|v|U|283
8T5H|1|v|C|284
Current chains
- Chain v
- 16S
Nearby chains
- Chain k
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S17
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