3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAAGGG*CAUUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T5H_138 not in the Motif Atlas
Homologous match to IL_5J7L_023
Geometric discrepancy: 0.1585
The information below is about IL_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70801.1
Basepair signature
cWW-cWW-L-R-tWW-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

8T5H|1|v|G|450
8T5H|1|v|A|451
8T5H|1|v|A|452
8T5H|1|v|G|453
8T5H|1|v|G|454
8T5H|1|v|G|455
*
8T5H|1|v|C|477
8T5H|1|v|A|478
8T5H|1|v|U|479
8T5H|1|v|U|480
8T5H|1|v|G|481
8T5H|1|v|A|482
8T5H|1|v|C|483

Current chains

Chain v
16S

Nearby chains

Chain o
30S ribosomal protein S16

Coloring options:


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