3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGGCUAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T5H_139 not in the Motif Atlas
Homologous match to IL_4LFB_020
Geometric discrepancy: 0.0761
The information below is about IL_4LFB_020
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

8T5H|1|v|C|504
8T5H|1|v|G|505
8T5H|1|v|G|506
8T5H|1|v|C|507
8T5H|1|v|U|508
8T5H|1|v|A|509
8T5H|1|v|A|510
8T5H|1|v|C|511
*
8T5H|1|v|G|540
8T5H|1|v|G|541

Current chains

Chain v
16S

Nearby chains

Chain c
30S ribosomal protein S4
Chain k
30S ribosomal protein S12

Coloring options:


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