IL_8T5H_149
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAAUU*AGGAAU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T5H_149 not in the Motif Atlas
- Homologous match to IL_4LFB_030
- Geometric discrepancy: 0.1003
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
8T5H|1|v|A|673
8T5H|1|v|G|674
8T5H|1|v|A|675
8T5H|1|v|A|676
8T5H|1|v|U|677
8T5H|1|v|U|678
*
8T5H|1|v|A|712
8T5H|1|v|G|713
8T5H|1|v|G|714
8T5H|1|v|A|715
8T5H|1|v|A|716
8T5H|1|v|U|717
Current chains
- Chain v
- 16S
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain e
- 30S ribosomal protein S6, non-modified isoform
- Chain j
- 30S ribosomal protein S11
- Chain q
- 30S ribosomal protein S18
Coloring options: