IL_8T5H_176

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_176 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1271

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8T5H|1|v|G|1401
8T5H|1|v|C|1402
8T5H|1|v|C|1403
8T5H|1|v|C|1404
*
8T5H|1|v|G|1497
8T5H|1|v|U|1498
8T5H|1|v|A|1499
8T5H|1|v|A|1500
8T5H|1|v|C|1501

Current chains

Chain v

16S

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain x

lmRNA