3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGAG*UGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T5H_180 not in the Motif Atlas
Homologous match to IL_6CZR_169
Geometric discrepancy: 0.1383
The information below is about IL_6CZR_169
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.14
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
36

Unit IDs

8T5H|1|v|G|1416
8T5H|1|v|G|1417
8T5H|1|v|A|1418
8T5H|1|v|G|1419
*
8T5H|1|v|U|1481
8T5H|1|v|G|1482
8T5H|1|v|A|1483
8T5H|1|v|C|1484

Current chains

Chain v
16S

Nearby chains

Chain B
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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