IL_8T5H_182

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAG*CGC

Length

7 nucleotides

Bulged bases

8T5H|1|v|A|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_182 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2218

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8T5H|1|v|G|1439
8T5H|1|v|U|1440
8T5H|1|v|A|1441
8T5H|1|v|G|1442
*
8T5H|1|v|C|1460
8T5H|1|v|G|1461
8T5H|1|v|C|1462

Current chains

Chain v

16S

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L19

Chain s

30S ribosomal protein S20