IL_8T5H_187

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_187 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1332

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8T5H|1|B|U|1851
8T5H|1|B|U|1852
8T5H|1|B|A|1853
8T5H|1|B|A|1854
8T5H|1|B|U|1855
8T5H|1|B|U|1856
8T5H|1|B|G|1857
8T5H|1|B|A|1858
8T5H|1|B|U|1859
8T5H|1|B|G|1860
*
8T5H|1|B|U|1882
8T5H|1|B|U|1883
8T5H|1|B|G|1884
8T5H|1|B|A|1885
8T5H|1|B|U|1886
8T5H|1|B|C|1887
8T5H|1|B|G|1888
8T5H|1|B|A|1889
8T5H|1|B|A|1890
8T5H|1|B|G|1891

Current chains

Chain B

23S

Nearby chains