3D structure

PDB id
8T8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
8T8C|1|2a|U|244, 8T8C|1|2a|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T8C_302 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.0646
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

8T8C|1|2a|C|242
8T8C|1|2a|A|243
8T8C|1|2a|U|244
8T8C|1|2a|C|245
8T8C|1|2a|A|246
8T8C|1|2a|G|247
*
8T8C|1|2a|C|277
8T8C|1|2a|G|278
8T8C|1|2a|A|279
8T8C|1|2a|C|280
8T8C|1|2a|G|281
8T8C|1|2a|A|282
8T8C|1|2a|C|283
8T8C|1|2a|G|284

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2l
30S ribosomal protein S12
Chain 2q
30S ribosomal protein S17

Coloring options:


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