IL_8T8C_312

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8T8C|1|2a|A|532, 8T8C|1|2a|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T8C_312 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2256

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8T8C|1|2a|G|515
8T8C|1|2a|PSU|516
8T8C|1|2a|G|517
8T8C|1|2a|C|518
8T8C|1|2a|C|519
8T8C|1|2a|A|520
8T8C|1|2a|G|521
*
8T8C|1|2a|C|528
8T8C|1|2a|G|529
8T8C|1|2a|G|530
8T8C|1|2a|U|531
8T8C|1|2a|A|532
8T8C|1|2a|A|533
8T8C|1|2a|U|534
8T8C|1|2a|A|535
8T8C|1|2a|C|536

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12

Chain 2y

Ribosome-associated inhibitor A