IL_8UB9_002

3D structure

PDB id

8UB9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase- Active state (N-empty) 1a

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UB9_002 not in the Motif Atlas

Geometric match to IL_4Y1M_005

Geometric discrepancy: 0.1051

The information below is about IL_4Y1M_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01334.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

23

Unit IDs

8UB9|1|H|G|119
8UB9|1|H|C|120
8UB9|1|H|C|121
*
8UB9|1|I|G|53
8UB9|1|I|U|54
8UB9|1|I|C|55

Current chains

Chain H

Diversity-generating retroelement (DGR) RNA TR

Chain I

Diversity-generating retroelement (DGR) RNA Sp

Nearby chains

Chain A

Reverse transcriptase