IL_8UBC_005
3D structure
- PDB id
- 8UBC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- CGAUUAC*GGAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8UBC|1|I|U|110
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UBC_005 not in the Motif Atlas
- Geometric match to IL_5TBW_061
- Geometric discrepancy: 0.242
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8UBC|1|I|C|107
8UBC|1|I|G|108
8UBC|1|I|A|109
8UBC|1|I|U|110
8UBC|1|I|U|111
8UBC|1|I|A|112
8UBC|1|I|C|113
*
8UBC|1|I|G|121
8UBC|1|I|G|122
8UBC|1|I|A|123
8UBC|1|I|A|124
8UBC|1|I|A|125
8UBC|1|I|G|126
Current chains
- Chain I
- Diversity-generating retroelement (DGR) RNA Sp
Nearby chains
- Chain A
- Reverse transcriptase
Coloring options: