IL_8UD6_074
3D structure
- PDB id
- 8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 8UD6|1|1A|A|1938, 8UD6|1|1A|U|1944, 8UD6|1|1A|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UD6_074 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.108
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
8UD6|1|1A|C|1934
8UD6|1|1A|G|1935
8UD6|1|1A|A|1936
8UD6|1|1A|A|1937
8UD6|1|1A|A|1938
8UD6|1|1A|5MU|1939
8UD6|1|1A|U|1940
8UD6|1|1A|C|1941
8UD6|1|1A|5MC|1942
8UD6|1|1A|U|1943
8UD6|1|1A|U|1944
8UD6|1|1A|G|1945
*
8UD6|1|1A|C|1961
8UD6|1|1A|5MC|1962
8UD6|1|1A|U|1963
8UD6|1|1A|G|1964
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1w
- Transfer RNA; tRNA
Coloring options: