IL_8UD6_309

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_309 not in the Motif Atlas

Homologous match to IL_4LFB_023

Geometric discrepancy: 0.0679

The information below is about IL_4LFB_023

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8UD6|1|2a|U|580
8UD6|1|2a|G|581
8UD6|1|2a|U|582
8UD6|1|2a|A|583
8UD6|1|2a|G|584
*
8UD6|1|2a|U|757
8UD6|1|2a|G|758
8UD6|1|2a|A|759
8UD6|1|2a|G|760
8UD6|1|2a|G|761

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2l

30S ribosomal protein S12

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17