3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UD6_309 not in the Motif Atlas
Homologous match to IL_4LFB_023
Geometric discrepancy: 0.0679
The information below is about IL_4LFB_023
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.6
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
16

Unit IDs

8UD6|1|2a|U|580
8UD6|1|2a|G|581
8UD6|1|2a|U|582
8UD6|1|2a|A|583
8UD6|1|2a|G|584
*
8UD6|1|2a|U|757
8UD6|1|2a|G|758
8UD6|1|2a|A|759
8UD6|1|2a|G|760
8UD6|1|2a|G|761

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2A
Large subunit ribosomal RNA; LSU rRNA
Chain 2l
30S ribosomal protein S12
Chain 2o
30S ribosomal protein S15
Chain 2q
30S ribosomal protein S17

Coloring options:


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