IL_8UD6_320

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_320 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0595

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8UD6|1|2a|G|887
8UD6|1|2a|G|888
8UD6|1|2a|A|889
8UD6|1|2a|G|890
8UD6|1|2a|U|891
8UD6|1|2a|A|892
8UD6|1|2a|C|893
8UD6|1|2a|G|894
*
8UD6|1|2a|U|905
8UD6|1|2a|G|906
8UD6|1|2a|A|907
8UD6|1|2a|A|908
8UD6|1|2a|A|909
8UD6|1|2a|C|910

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17