IL_8UD6_367

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

8UD6|1|1A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_367 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4603

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.8

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

31

Unit IDs

8UD6|1|1A|C|2129
8UD6|1|1A|U|2130
8UD6|1|1A|G|2131
8UD6|1|1A|U|2132
8UD6|1|1A|G|2133
8UD6|1|1A|A|2134
8UD6|1|1A|A|2135
8UD6|1|1A|C|2136
*
8UD6|1|1A|G|2155
8UD6|1|1A|G|2156
8UD6|1|1A|G|2157
8UD6|1|1A|A|2158
8UD6|1|1A|G|2159

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains