IL_8UD7_169

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD7_169 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0746

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8UD7|1|1a|C|1303
8UD7|1|1a|G|1304
8UD7|1|1a|G|1305
8UD7|1|1a|A|1306
8UD7|1|1a|U|1307
8UD7|1|1a|U|1308
*
8UD7|1|1a|A|1329
8UD7|1|1a|U|1330
8UD7|1|1a|G|1331
8UD7|1|1a|A|1332
8UD7|1|1a|A|1333
8UD7|1|1a|G|1334

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1u

30S ribosomal protein Thx