IL_8UIK_039

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8UIK|1|L5|C|1214, 8UIK|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_039 not in the Motif Atlas

Geometric match to IL_7ZO1_011

Geometric discrepancy: 0.3366

The information below is about IL_7ZO1_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

8UIK|1|L5|C|1082
8UIK|1|L5|U|1083
8UIK|1|L5|C|1084
*
8UIK|1|L5|G|1213
8UIK|1|L5|C|1214
8UIK|1|L5|C|1215
8UIK|1|L5|C|1216
8UIK|1|L5|G|1217

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

Large ribosomal subunit protein eL29