IL_8UIK_094

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

8UIK|1|L5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_094 not in the Motif Atlas

Homologous match to IL_8CRE_066

Geometric discrepancy: 0.3449

The information below is about IL_8CRE_066

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

8UIK|1|L5|U|2415
8UIK|1|L5|G|2416
8UIK|1|L5|A|2417
8UIK|1|L5|A|2418
8UIK|1|L5|C|2419
*
8UIK|1|L5|G|2427
8UIK|1|L5|A|2428
8UIK|1|L5|A|2429

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ll

60S ribosomal protein L39