IL_8UIK_264

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8UIK|1|S2|C|1701, 8UIK|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIK_264 not in the Motif Atlas

Homologous match to IL_8CRE_466

Geometric discrepancy: 0.074

The information below is about IL_8CRE_466

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8UIK|1|S2|C|1700
8UIK|1|S2|C|1701
8UIK|1|S2|G|1702
*
8UIK|1|S2|C|1833
8UIK|1|S2|A|1834
8UIK|1|S2|A|1835
8UIK|1|S2|G|1836

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Sa

40S ribosomal protein S26