IL_8UIW_004

3D structure

PDB id

8UIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

yjdF riboswitch from R. gauvreauii in complex with chelerythrine bound to Fab BL3-6 S97N

Experimental method

X-RAY DIFFRACTION

Resolution

2.77 Å

Loop

Sequence

CUUC*GUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UIW_004 not in the Motif Atlas

Geometric match to IL_4EYA_003

Geometric discrepancy: 0.16

The information below is about IL_4EYA_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8UIW|1|R|C|100
8UIW|1|R|U|101
8UIW|1|R|U|102
8UIW|1|R|C|103
*
8UIW|1|R|G|112
8UIW|1|R|U|113
8UIW|1|R|C|114
8UIW|1|R|G|115

Current chains

Chain R

yjdF RNA (R. gauvreauii)

Nearby chains