3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
AGGGCAAG*CU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UIZ_212 not in the Motif Atlas
Homologous match to IL_8CRE_421
Geometric discrepancy: 0.0787
The information below is about IL_8CRE_421
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_11411.1
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
12

Unit IDs

8UIZ|1|S2|A|599
8UIZ|1|S2|G|600
8UIZ|1|S2|G|601
8UIZ|1|S2|G|602
8UIZ|1|S2|C|603
8UIZ|1|S2|A|604
8UIZ|1|S2|A|605
8UIZ|1|S2|G|606
*
8UIZ|1|S2|C|636
8UIZ|1|S2|U|637

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SC
40S ribosomal protein S2
Chain SJ
40S ribosomal protein S9
Chain Se
Small ribosomal subunit protein eS30

Coloring options:


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