IL_8UJ9_082

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8UJ9|1|L5|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_082 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.2748

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.2

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8UJ9|1|L5|G|1973
8UJ9|1|L5|U|1974
8UJ9|1|L5|G|1975
8UJ9|1|L5|G|1976
8UJ9|1|L5|C|1977
*
8UJ9|1|L5|G|1989
8UJ9|1|L5|A|1990
8UJ9|1|L5|A|1991
8UJ9|1|L5|U|1992
8UJ9|1|L5|C|1993

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

Large ribosomal subunit protein uL11