IL_8UJ9_123

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8UJ9|1|L5|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_123 not in the Motif Atlas

Homologous match to IL_8P9A_322

Geometric discrepancy: 0.0875

The information below is about IL_8P9A_322

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

8UJ9|1|L5|G|3916
8UJ9|1|L5|A|3917
*
8UJ9|1|L5|U|4384
8UJ9|1|L5|A|4385
8UJ9|1|L5|C|4386
8UJ9|1|L5|C|4387

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Pt

Transfer RNA; tRNA