IL_8UJ9_225

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_225 not in the Motif Atlas

Geometric match to IL_8P9A_417

Geometric discrepancy: 0.1068

The information below is about IL_8P9A_417

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

8UJ9|1|S2|A|922
8UJ9|1|S2|G|923
*
8UJ9|1|S2|C|1019
8UJ9|1|S2|A|1020
8UJ9|1|S2|U|1021
8UJ9|1|S2|U|1022

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S15a

Chain Sb

Small ribosomal subunit protein eS27