3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
GGAGUAUG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJ9_237 not in the Motif Atlas
Homologous match to IL_8CRE_442
Geometric discrepancy: 0.0715
The information below is about IL_8CRE_442
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_84044.1
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
5

Unit IDs

8UJ9|1|S2|G|1168
8UJ9|1|S2|G|1169
8UJ9|1|S2|A|1170
8UJ9|1|S2|G|1171
8UJ9|1|S2|U|1172
8UJ9|1|S2|A|1173
8UJ9|1|S2|U|1174
8UJ9|1|S2|G|1175
*
8UJ9|1|S2|U|1186
8UJ9|1|S2|G|1187
8UJ9|1|S2|A|1188
8UJ9|1|S2|A|1189
8UJ9|1|S2|A|1190
8UJ9|1|S2|C|1191

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain Ln
60S ribosomal protein L41
Chain SX
40S ribosomal protein S23

Coloring options:


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