IL_8UJB_085
3D structure
- PDB id
- 8UJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8UJB|1|L5|G|1975
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJB_085 not in the Motif Atlas
- Homologous match to IL_8P9A_283
- Geometric discrepancy: 0.2103
- The information below is about IL_8P9A_283
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16218.3
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8UJB|1|L5|G|1973
8UJB|1|L5|U|1974
8UJB|1|L5|G|1975
8UJB|1|L5|G|1976
8UJB|1|L5|C|1977
*
8UJB|1|L5|G|1989
8UJB|1|L5|A|1990
8UJB|1|L5|A|1991
8UJB|1|L5|U|1992
8UJB|1|L5|C|1993
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LI
- Ribosomal protein uL16-like
- Chain Ls
- 60S acidic ribosomal protein P0
- Chain Lt
- 60S ribosomal protein L12
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