IL_8UJC_023

3D structure

PDB id

8UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8UJC|1|L5|G|483, 8UJC|1|L5|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJC_023 not in the Motif Atlas

Geometric match to IL_8CRE_398

Geometric discrepancy: 0.1434

The information below is about IL_8CRE_398

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8UJC|1|L5|G|482
8UJC|1|L5|G|483
8UJC|1|L5|U|484
8UJC|1|L5|C|485
*
8UJC|1|L5|G|671
8UJC|1|L5|C|672

Current chains

Chain L5

28S rRNA

Nearby chains