IL_8UJC_167

3D structure

PDB id

8UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

8UJC|1|L5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJC_167 not in the Motif Atlas

Homologous match to IL_8P9A_359

Geometric discrepancy: 0.168

The information below is about IL_8P9A_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8UJC|1|L5|G|5000
8UJC|1|L5|U|5001
8UJC|1|L5|U|5002
*
8UJC|1|L5|G|5045
8UJC|1|L5|U|5046
8UJC|1|L5|C|5047
8UJC|1|L5|A|5048
8UJC|1|L5|G|5049
8UJC|1|L5|C|5050

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LW

Ribosomal protein L24

Chain Ld

60S ribosomal protein L31