IL_8UJD_082

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8UJD|1|L5|G|1975, 8UJD|1|L5|U|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_082 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.2715

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8UJD|1|L5|G|1973
8UJD|1|L5|U|1974
8UJD|1|L5|G|1975
8UJD|1|L5|G|1976
8UJD|1|L5|C|1977
*
8UJD|1|L5|G|1989
8UJD|1|L5|A|1990
8UJD|1|L5|A|1991
8UJD|1|L5|U|1992
8UJD|1|L5|C|1993

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like